Publications

    [2013]
  • Walzer M, Qi D, Mayer G, Uszkoreit J, Eisenacher M, Sachsenberg T,Gonzalez-Galarza FF, Fan J, Bessant C, Deutsch EW, Reisinger F, Vizcaíno JA,Medina-Aunon JA, Albar JP, Kohlbacher O, Jones AR. The mzQuantML Data Standard
    for Mass Spectrometry-based Quantitative Studies in Proteomics. Mol Cell Proteomics. 2013 Aug;12(8):2332-40. PubMed PMID: 23599424.
  • Ghali F, Krishna R, Lukasse P, Martinez-Bartolome S, Reisinger F, Hermjakob H, Vizcaino JA, Jones AR. A toolkit for the mzIdentML standard: the ProteoIDViewer,the mzidLibrary and the mzidValidator. Mol Cell Proteomics. 2013 Jun 28. [Epub
    ahead of print] PubMed PMID: 23813117.
  • Martínez-Bartolomé S, Deutsch EW, Binz PA, Jones AR, Eisenacher M, Mayer G, Campos A, Canals F, Bech-Serra JJ, Carrascal M, Gay M, Paradela A, Navajas R, Marcilla M, Hernáez ML, Gutiérrez-Blázquez MD, Velarde LF, Aloria K, Beaskoetxea J, Medina-Aunon JA, Albar JP. Guidelines for reporting quantitative mass spectrometry based experiments in proteomics. J Proteomics. 2013 Mar 14. PubMed PMID: 23500130.
  • Medina-Aunon JA, Krishna R, Ghali F, Albar JP, Jones AJ. A guide for integration of proteomic data standards into laboratory workflows. Proteomics. 2013 Feb;13(3-4):480-92 Review. PubMed PMID: 23319203.
  • Segura V, Medina-Aunon JA, Guruceaga E, Gharbi SI, González-Tejedo C, Sánchez del Pino MM, Canals F, Fuentes M, Casal JI, Martínez-Bartolomé S, Elortza F, Mato JM, Arizmendi JM, Abian J, Oliveira E, Gil C, Vivanco F, Blanco F, Albar JP, Corrales FJ. Spanish human proteome project: dissection of chromosome 16. J.Proteome Res. 2013 Jan 4;12(1):112-22. PubMed PMID: 23234512.
  • [2012]

  • Orchard S, Albar JP, Deutsch EW, Eisenacher M, Binz PA, Martinez-Bartolomé S, Vizcaíno JA, Hermjakob H. From proteomics data representation to public data flow: a report on the HUPO-PSI workshop September 2011, Geneva, Switzerland.
    Proteomics. 2012 Feb;12(3):351-5. PubMed PMID: 22290802
  • [2011]

  • Medina-Aunon JA, Martinez-Bartolome S, Lopez-Garcia MA, Salazar E, Navajas R, Jones AR, Paradela A, Albar JP. The ProteoRed MIAPE web toolkit: A user-friendly framework to connect and share proteomics standardsMol Cell Proteomics. 2011 Oct;10(10):M111.008334 PubMed PMID: 21983993
  • Kenyani, J*, Medina-Aunon, JA*, Martínez-Bartolome, S. Albar, JP, Wastling, JM and Jones, AR. A DIGE study on the effects of salbutamol on the rat muscle proteome - an exemplar of best practice for data sharing in proteomics BMC Research Notes 2011, Mar 28;4:86. PubMed PMID: 21443781
    * These authors contributed equally to this work
  • Medina-Aunon JA, Carazo JM, Albar JP. PRIDEViewer: a novel user-friendly interface to visualize PRIDE XML files. Proteomics. 2011 Jan;11(2):334-7. doi: 10.1002/pmic.201000448. Jan;11(2):334-7. PubMed PMID: 21204261.
  • [2010]

  • Medina-Aunon JA, Paradela A, Macht M, Thiele H, Corthals G, Albar JP. Protein Information and Knowledge Extractor: Discovering biological information from proteomics data. Proteomics. 2010 Sep;10(18):3262-71. PubMed PMID: 20707001.
  • Gibson F, Hoogland C, Martinez-Bartolomé S, Medina-Aunon JA, Albar JP, Babnigg G, Wipat A, Hermjakob H, Almeida JS, Stanislaus R, Paton NW, Jones AR. The gel electrophoresis markup language (GelML) from the Proteomics Standards Initiative.Proteomics. 2010 Sep;10(17):3073-81. PubMed PMID: 20677327.
  • Hoogland C, O'Gorman M, Bogard P, Gibson F, Berth M, Cockell SJ, Ekefjärd A,Forsstrom-Olsson O, Kapferer A, Nilsson M, Martínez-Bartolomé S, Albar JP,Echevarría-Zomeño S, Martínez-Gomariz M, Joets J, Binz PA, Taylor CF, Dowsey A,Jones AR; Minimum Information About a Proteomics Experiment (MIAPE). Guidelines for reporting the use of gel image informatics in proteomics. Nat Biotechnol.2010 Jul;28(7):655-6. PubMed PMID: 20622830.
  • Martinez-Bartolome S, Blanco F, Albar JP. Relevance of proteomics standards for the ProteoRed Spanish organization. J Proteomics. 2010 Apr 18;73(6):1061-6.Epub 2010 Jan 25. Review. PubMed PMID: 20097317.
  • Martínez-Bartolomé S, Medina-Aunon JA, Jones AR, Albar JP. Semi-automatic tool to describe, store and compare proteomics experiments based on MIAPE compliant reports. Proteomics. 2010 Mar;10(6):1256-60. PubMed PMID: 20077409.
  • [2008]

  • Rodríguez-Pérez MA, Medina-Aunon A, Encarnación-Guevara SM, Bernal-Silvia S, Barrera-Saldaña H, Albar-Ramírez JP. In silico analysis of protein neoplastic biomarkers for cervix and uterine cancer. Clin Transl Oncol. 2008 Oct;10(10):604-17. PubMed PMID: 18940741.